HL_5NGM_043
3D structure
- PDB id
- 5NGM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9S structure of the 70S ribosome composing the S. aureus 100S complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUUUAUCAAAAAC
- Length
- 13 nucleotides
- Bulged bases
- 5NGM|1|AA|A|1807, 5NGM|1|AA|U|1808, 5NGM|1|AA|C|1809, 5NGM|1|AA|A|1813
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5NGM_043 not in the Motif Atlas
- Homologous match to HL_7A0S_045
- Geometric discrepancy: 0.149
- The information below is about HL_7A0S_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50951.1
- Basepair signature
- cWW-F-F-tWH-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
5NGM|1|AA|G|1803
5NGM|1|AA|U|1804
5NGM|1|AA|U|1805
5NGM|1|AA|U|1806
5NGM|1|AA|A|1807
5NGM|1|AA|U|1808
5NGM|1|AA|C|1809
5NGM|1|AA|A|1810
5NGM|1|AA|A|1811
5NGM|1|AA|A|1812
5NGM|1|AA|A|1813
5NGM|1|AA|A|1814
5NGM|1|AA|C|1815
Current chains
- Chain AA
- 23S Ribosomal RNA
Nearby chains
- Chain A2
- 50S ribosomal protein L34
- Chain AC
- 50S ribosomal protein L2
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