HL_5NGM_081

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AAGUAACUGU

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NGM_081 not in the Motif Atlas

Geometric match to HL_4TUE_219

Geometric discrepancy: 0.3484

The information below is about HL_4TUE_219

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

5NGM|1|Aa|A|470
5NGM|1|Aa|A|471
5NGM|1|Aa|G|472
5NGM|1|Aa|U|473
5NGM|1|Aa|A|474
5NGM|1|Aa|A|475
5NGM|1|Aa|C|476
5NGM|1|Aa|U|477
5NGM|1|Aa|G|478
5NGM|1|Aa|U|479

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Ap

30S ribosomal protein S16