HL_5NGM_086

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAUUAGAUACC

Length

11 nucleotides

Bulged bases

5NGM|1|Aa|U|801

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NGM_086 not in the Motif Atlas

Homologous match to HL_4LFB_017

Geometric discrepancy: 0.4177

The information below is about HL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38491.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

5NGM|1|Aa|G|794
5NGM|1|Aa|A|795
5NGM|1|Aa|U|796
5NGM|1|Aa|U|797
5NGM|1|Aa|A|798
5NGM|1|Aa|G|799
5NGM|1|Aa|A|800
5NGM|1|Aa|U|801
5NGM|1|Aa|A|802
5NGM|1|Aa|C|803
5NGM|1|Aa|C|804

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Ak

30S ribosomal protein S11

Chain Av

Ribosome hibernation promoting factor