HL_5NGM_103

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCACGUGAAAU

Length

11 nucleotides

Bulged bases

5NGM|1|AA|G|432

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NGM_103 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.2516

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

5NGM|1|AA|G|428
5NGM|1|AA|C|429
5NGM|1|AA|A|430
5NGM|1|AA|C|431
5NGM|1|AA|G|432
5NGM|1|AA|U|433
5NGM|1|AA|G|434
5NGM|1|AA|A|435
5NGM|1|AA|A|436
5NGM|1|AA|A|437
5NGM|1|AA|U|438

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AV

50S ribosomal protein L28