HL_5NJT_006

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

5NJT|1|A|G|274

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NJT_006 not in the Motif Atlas

Homologous match to HL_4LFB_006

Geometric discrepancy: 0.2069

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

5NJT|1|A|G|267
5NJT|1|A|G|268
5NJT|1|A|U|269
5NJT|1|A|A|270
5NJT|1|A|A|271
5NJT|1|A|C|272
5NJT|1|A|G|273
5NJT|1|A|G|274
5NJT|1|A|C|275

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain Q

30S ribosomal protein S17

Chain T

30S ribosomal protein S20