HL_5NJT_017

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAUUAGAUACC

Length

11 nucleotides

Bulged bases

5NJT|1|A|U|802

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NJT_017 not in the Motif Atlas

Homologous match to HL_5J7L_017

Geometric discrepancy: 0.199

The information below is about HL_5J7L_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

5NJT|1|A|G|795
5NJT|1|A|A|796
5NJT|1|A|U|797
5NJT|1|A|U|798
5NJT|1|A|A|799
5NJT|1|A|G|800
5NJT|1|A|A|801
5NJT|1|A|U|802
5NJT|1|A|A|803
5NJT|1|A|C|804
5NJT|1|A|C|805

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain K

30S ribosomal protein S11

Chain U

Large subunit ribosomal RNA; LSU rRNA

Chain x

Ribosome hibernation promotion factor