HL_5NJT_025

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AUUCAGUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NJT_025 not in the Motif Atlas

Geometric match to HL_4V88_215

Geometric discrepancy: 0.3103

The information below is about HL_4V88_215

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

5NJT|1|A|A|1143
5NJT|1|A|U|1144
5NJT|1|A|U|1145
5NJT|1|A|C|1146
5NJT|1|A|A|1147
5NJT|1|A|G|1148
5NJT|1|A|U|1149
5NJT|1|A|U|1150

Current chains

Chain A

16S ribosomal RNA

Nearby chains