HL_5NJT_029

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAUCAGCAUGC

Length

11 nucleotides

Bulged bases

5NJT|1|A|U|1373

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NJT_029 not in the Motif Atlas

Homologous match to HL_5J7L_029

Geometric discrepancy: 0.1567

The information below is about HL_5J7L_029

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06226.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5NJT|1|A|G|1365
5NJT|1|A|A|1366
5NJT|1|A|U|1367
5NJT|1|A|C|1368
5NJT|1|A|A|1369
5NJT|1|A|G|1370
5NJT|1|A|C|1371
5NJT|1|A|A|1372
5NJT|1|A|U|1373
5NJT|1|A|G|1374
5NJT|1|A|C|1375

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain I

30S ribosomal protein S9

Chain J

30S ribosomal protein S10

Chain N

30S ribosomal protein S14