HL_5NJT_073

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AGAGAAU

Length

7 nucleotides

Bulged bases

5NJT|1|U|A|1679

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NJT_073 not in the Motif Atlas

Homologous match to HL_5J7L_174

Geometric discrepancy: 0.1802

The information below is about HL_5J7L_174

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

5NJT|1|U|A|1675
5NJT|1|U|G|1676
5NJT|1|U|A|1677
5NJT|1|U|G|1678
5NJT|1|U|A|1679
5NJT|1|U|A|1680
5NJT|1|U|U|1681

Current chains

Chain U

23S ribosomal RNA

Nearby chains