HL_5NJT_093

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGUAGUCG

Length

8 nucleotides

Bulged bases

5NJT|1|U|G|2558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NJT_093 not in the Motif Atlas

Homologous match to HL_7A0S_060

Geometric discrepancy: 0.2054

The information below is about HL_7A0S_060

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_46665.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

5NJT|1|U|U|2557
5NJT|1|U|G|2558
5NJT|1|U|U|2559
5NJT|1|U|A|2560
5NJT|1|U|G|2561
5NJT|1|U|U|2562
5NJT|1|U|C|2563
5NJT|1|U|G|2564

Current chains

Chain U

23S ribosomal RNA

Nearby chains

Chain a

50S ribosomal protein L6

Chain t

50S ribosomal protein L36