HL_5NP6_057
3D structure
- PDB id
- 5NP6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S structure prior to bypassing
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- U(1MG)(PSU)(5MC)GAAAAA
- Length
- 10 nucleotides
- Bulged bases
- 5NP6|1|Y|A|751, 5NP6|1|Y|A|752
- QA status
- Modified nucleotides: 1MG, PSU, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5NP6_057 not in the Motif Atlas
- Homologous match to HL_5J7L_155
- Geometric discrepancy: 0.181
- The information below is about HL_5J7L_155
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_88205.2
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 7
Unit IDs
5NP6|1|Y|U|744
5NP6|1|Y|1MG|745
5NP6|1|Y|PSU|746
5NP6|1|Y|5MC|747
5NP6|1|Y|G|748
5NP6|1|Y|A|749
5NP6|1|Y|A|750
5NP6|1|Y|A|751
5NP6|1|Y|A|752
5NP6|1|Y|A|753
Current chains
- Chain Y
- 23S ribosomal RNA
Nearby chains
- Chain 0
- 50S ribosomal protein L34
- Chain C
- DNA topoisomerase small subunit
- Chain b
- 50S ribosomal protein L3
- Chain q
- 50S ribosomal protein L22
- Chain y
- 50S ribosomal protein L32
Coloring options: