HL_5NP6_070

3D structure

PDB id

5NP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S structure prior to bypassing

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

5NP6|1|Y|A|1453, 5NP6|1|Y|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NP6_070 not in the Motif Atlas

Geometric match to HL_5TBW_004

Geometric discrepancy: 0.2309

The information below is about HL_5TBW_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86929.1

Basepair signature

cWW-F

Number of instances in this motif group

9

Unit IDs

5NP6|1|Y|C|1451
5NP6|1|Y|G|1452
5NP6|1|Y|A|1453
5NP6|1|Y|C|1454
5NP6|1|Y|G|1455
5NP6|1|Y|G|1456
5NP6|1|Y|U|1457
5NP6|1|Y|U|1458
5NP6|1|Y|G|1459

Current chains

Chain Y

23S ribosomal RNA

Nearby chains

Chain l

50S ribosomal protein L17