HL_5NRG_021

3D structure

PDB id

5NRG (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

CUGAAUAGG

Length

9 nucleotides

Bulged bases

5NRG|1|X|U|690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NRG_021 not in the Motif Atlas

Geometric match to HL_4V9F_032

Geometric discrepancy: 0.2396

The information below is about HL_4V9F_032

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_77082.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

8

Unit IDs

5NRG|1|X|C|685
5NRG|1|X|U|686
5NRG|1|X|G|687
5NRG|1|X|A|688
5NRG|1|X|A|689
5NRG|1|X|U|690
5NRG|1|X|A|691
5NRG|1|X|G|692
5NRG|1|X|G|693

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L35