HL_5O60_070

3D structure

PDB id

5O60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S large ribosomal subunit from Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

5O60|1|A|G|2975

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5O60_070 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.0863

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

5O60|1|A|C|2969
5O60|1|A|U|2970
5O60|1|A|G|2971
5O60|1|A|A|2972
5O60|1|A|A|2973
5O60|1|A|A|2974
5O60|1|A|G|2975
5O60|1|A|C|2976
5O60|1|A|A|2977
5O60|1|A|U|2978
5O60|1|A|C|2979
5O60|1|A|U|2980
5O60|1|A|A|2981
5O60|1|A|A|2982
5O60|1|A|G|2983

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L6

Chain K

50S ribosomal protein L13

Chain f

50S ribosomal protein L36