HL_5T2A_007

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUUGACUC

Length

8 nucleotides

Bulged bases

5T2A|1|2|U|297

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T2A_007 not in the Motif Atlas

Homologous match to HL_4V88_191

Geometric discrepancy: 0.2982

The information below is about HL_4V88_191

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

5T2A|1|2|G|291
5T2A|1|2|U|292
5T2A|1|2|U|293
5T2A|1|2|G|294
5T2A|1|2|A|295
5T2A|1|2|C|296
5T2A|1|2|U|297
5T2A|1|2|C|298

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 1

eS4

Chain 3

eS6

Chain AE

uS17