HL_5T2A_009

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGUAGUGGA

Length

9 nucleotides

Bulged bases

5T2A|1|2|G|381

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T2A_009 not in the Motif Atlas

Homologous match to HL_4V88_193

Geometric discrepancy: 0.12

The information below is about HL_4V88_193

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_82182.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

5T2A|1|2|U|374
5T2A|1|2|G|375
5T2A|1|2|U|376
5T2A|1|2|A|377
5T2A|1|2|G|378
5T2A|1|2|U|379
5T2A|1|2|G|380
5T2A|1|2|G|381
5T2A|1|2|A|382

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 5

eS8

Chain AE

uS17