HL_5T2A_028
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GACUCAACAC
- Length
- 10 nucleotides
- Bulged bases
- 5T2A|1|2|A|1550
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5T2A_028 not in the Motif Atlas
- Homologous match to HL_4V88_212
- Geometric discrepancy: 0.3707
- The information below is about HL_4V88_212
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50779.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
5T2A|1|2|G|1542
5T2A|1|2|A|1543
5T2A|1|2|C|1544
5T2A|1|2|U|1545
5T2A|1|2|C|1546
5T2A|1|2|A|1547
5T2A|1|2|A|1548
5T2A|1|2|C|1549
5T2A|1|2|A|1550
5T2A|1|2|C|1551
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain AK
- uS9
- Chain AM
- uS13
- Chain AO
- eS19
- Chain AQ
- uS10
Coloring options: