HL_5T2A_035
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GCUCAUCAAAC
- Length
- 11 nucleotides
- Bulged bases
- 5T2A|1|2|A|2017
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5T2A_035 not in the Motif Atlas
- Geometric match to HL_5J7L_029
- Geometric discrepancy: 0.3087
- The information below is about HL_5J7L_029
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06226.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
5T2A|1|2|G|2009
5T2A|1|2|C|2010
5T2A|1|2|U|2011
5T2A|1|2|C|2012
5T2A|1|2|A|2013
5T2A|1|2|U|2014
5T2A|1|2|C|2015
5T2A|1|2|A|2016
5T2A|1|2|A|2017
5T2A|1|2|A|2018
5T2A|1|2|C|2019
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain 8
- uS14
- Chain AK
- uS9
- Chain AM
- uS13
- Chain AO
- eS19
- Chain AQ
- uS10
Coloring options: