HL_5T2A_046
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UUUGGGAAUG
- Length
- 10 nucleotides
- Bulged bases
- 5T2A|1|A|A|321, 5T2A|1|A|A|322
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5T2A_046 not in the Motif Atlas
- Homologous match to HL_5TBW_008
- Geometric discrepancy: 0.1626
- The information below is about HL_5TBW_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_77436.2
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 23
Unit IDs
5T2A|1|A|U|315
5T2A|1|A|U|316
5T2A|1|A|U|317
5T2A|1|A|G|318
5T2A|1|A|G|319
5T2A|1|A|G|320
5T2A|1|A|A|321
5T2A|1|A|A|322
5T2A|1|A|U|323
5T2A|1|A|G|324
Current chains
- Chain A
- LSU-alpha
Nearby chains
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain L
- eL13
- Chain O
- eL15
- Chain Z
- uL15
- Chain r
- eL42
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