HL_5T2A_051

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUCUUGAAACAC

Length

12 nucleotides

Bulged bases

5T2A|1|A|C|680

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T2A_051 not in the Motif Atlas

Geometric match to HL_4V7M_040

Geometric discrepancy: 0.3648

The information below is about HL_4V7M_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50951.1

Basepair signature

cWW-F-F-tWH-F-F-F

Number of instances in this motif group

5

Unit IDs

5T2A|1|A|G|671
5T2A|1|A|U|672
5T2A|1|A|C|673
5T2A|1|A|U|674
5T2A|1|A|U|675
5T2A|1|A|G|676
5T2A|1|A|A|677
5T2A|1|A|A|678
5T2A|1|A|A|679
5T2A|1|A|C|680
5T2A|1|A|A|681
5T2A|1|A|C|682

Current chains

Chain A

LSU-alpha

Nearby chains

Chain B

Large subunit ribosomal RNA; LSU rRNA

Chain Z

uL15

Chain d

uL3

Chain g

eL32