HL_5T2A_079
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUAACUAUGAC
- Length
- 11 nucleotides
- Bulged bases
- 5T2A|1|B|A|439
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5T2A_079 not in the Motif Atlas
- Homologous match to HL_8C3A_049
- Geometric discrepancy: 0.1458
- The information below is about HL_8C3A_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_84702.1
- Basepair signature
- cWW-F-F-tHW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
5T2A|1|B|G|436
5T2A|1|B|U|437
5T2A|1|B|A|438
5T2A|1|B|A|439
5T2A|1|B|C|440
5T2A|1|B|U|441
5T2A|1|B|A|442
5T2A|1|B|U|443
5T2A|1|B|G|444
5T2A|1|B|A|445
5T2A|1|B|C|446
Current chains
- Chain B
- LSU-beta
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: