HL_5T2A_080

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UCCAAUUAG

Length

9 nucleotides

Bulged bases

5T2A|1|B|U|481

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T2A_080 not in the Motif Atlas

Homologous match to HL_8C3A_050

Geometric discrepancy: 0.1186

The information below is about HL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

5T2A|1|B|U|475
5T2A|1|B|C|476
5T2A|1|B|C|477
5T2A|1|B|A|478
5T2A|1|B|A|479
5T2A|1|B|U|480
5T2A|1|B|U|481
5T2A|1|B|A|482
5T2A|1|B|G|483

Current chains

Chain B

LSU-beta

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain U

uL14