HL_5T2A_083
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UUACACGACAACG
- Length
- 13 nucleotides
- Bulged bases
- 5T2A|1|B|A|1000, 5T2A|1|B|C|1007
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5T2A_083 not in the Motif Atlas
- Homologous match to HL_8C3A_056
- Geometric discrepancy: 0.1199
- The information below is about HL_8C3A_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_19870.9
- Basepair signature
- cWW-tHH-cWW-tHS-F-F-tWW
- Number of instances in this motif group
- 8
Unit IDs
5T2A|1|B|U|996
5T2A|1|B|U|997
5T2A|1|B|A|998
5T2A|1|B|C|999
5T2A|1|B|A|1000
5T2A|1|B|C|1001
5T2A|1|B|G|1002
5T2A|1|B|A|1003
5T2A|1|B|C|1004
5T2A|1|B|A|1005
5T2A|1|B|A|1006
5T2A|1|B|C|1007
5T2A|1|B|G|1008
Current chains
- Chain B
- LSU-beta
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain J
- uL16
- Chain S
- eL21
- Chain b
- eL29
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