HL_5T2C_025

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

5T2C|1|A|A|1630

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T2C_025 not in the Motif Atlas

Homologous match to HL_8C3A_021

Geometric discrepancy: 0.1462

The information below is about HL_8C3A_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5T2C|1|A|G|1627
5T2C|1|A|C|1628
5T2C|1|A|G|1629
5T2C|1|A|A|1630
5T2C|1|A|A|1631
5T2C|1|A|A|1632
5T2C|1|A|G|1633
5T2C|1|A|A|1634
5T2C|1|A|C|1635

Current chains

Chain A

28S rRNA

Nearby chains

Chain D

60S ribosomal protein L8

Chain d

60S ribosomal protein L37

Chain t

60S ribosomal protein L15