HL_5T2C_045
3D structure
- PDB id
- 5T2C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the human ribosome at 3.6 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CGCAGCAG
- Length
- 8 nucleotides
- Bulged bases
- 5T2C|1|A|C|2794, 5T2C|1|A|G|2796, 5T2C|1|A|A|2798
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5T2C_045 not in the Motif Atlas
- Homologous match to HL_8C3A_041
- Geometric discrepancy: 0.189
- The information below is about HL_8C3A_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_56817.1
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
5T2C|1|A|C|2792
5T2C|1|A|G|2793
5T2C|1|A|C|2794
5T2C|1|A|A|2795
5T2C|1|A|G|2796
5T2C|1|A|C|2797
5T2C|1|A|A|2798
5T2C|1|A|G|2799
Current chains
- Chain A
- 28S rRNA
Nearby chains
- Chain F
- 60S ribosomal protein L4
- Chain J
- 60S ribosomal protein L17
- Chain d
- 60S ribosomal protein L37
- Chain f
- 60S ribosomal protein L39
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