HL_5T2C_054

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

5T2C|1|A|U|3802

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T2C_054 not in the Motif Atlas

Homologous match to HL_8C3A_050

Geometric discrepancy: 0.1274

The information below is about HL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

5T2C|1|A|U|3796
5T2C|1|A|C|3797
5T2C|1|A|U|3798
5T2C|1|A|A|3799
5T2C|1|A|A|3800
5T2C|1|A|U|3801
5T2C|1|A|U|3802
5T2C|1|A|A|3803
5T2C|1|A|G|3804

Current chains

Chain A

28S rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain P

60S ribosomal protein L23