HL_5T2C_060

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UCAAACGGUAACG

Length

13 nucleotides

Bulged bases

5T2C|1|A|A|4214, 5T2C|1|A|C|4221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T2C_060 not in the Motif Atlas

Homologous match to HL_8C3A_056

Geometric discrepancy: 0.1318

The information below is about HL_8C3A_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

5T2C|1|A|U|4210
5T2C|1|A|C|4211
5T2C|1|A|A|4212
5T2C|1|A|A|4213
5T2C|1|A|A|4214
5T2C|1|A|C|4215
5T2C|1|A|G|4216
5T2C|1|A|G|4217
5T2C|1|A|U|4218
5T2C|1|A|A|4219
5T2C|1|A|A|4220
5T2C|1|A|C|4221
5T2C|1|A|G|4222

Current chains

Chain A

28S rRNA

Nearby chains

Chain N

60S ribosomal protein L21

Chain V

60S ribosomal protein L29

Chain p

60S ribosomal protein L10-like