HL_5T2C_067

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

5T2C|1|A|G|4475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T2C_067 not in the Motif Atlas

Homologous match to HL_8C3A_063

Geometric discrepancy: 0.1685

The information below is about HL_8C3A_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

5T2C|1|A|A|4474
5T2C|1|A|G|4475
5T2C|1|A|C|4476
5T2C|1|A|A|4477
5T2C|1|A|G|4478
5T2C|1|A|A|4479
5T2C|1|A|A|4480
5T2C|1|A|U|4481

Current chains

Chain A

28S rRNA

Nearby chains

Chain g

Ubiquitin-60S ribosomal protein L40

Chain o

60S ribosomal protein L9