HL_5T2C_081

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGUGACUC

Length

8 nucleotides

Bulged bases

5T2C|1|AA|U|294

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T2C_081 not in the Motif Atlas

Homologous match to HL_8C3A_197

Geometric discrepancy: 0.5609

The information below is about HL_8C3A_197

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

5T2C|1|AA|G|288
5T2C|1|AA|G|289
5T2C|1|AA|U|290
5T2C|1|AA|G|291
5T2C|1|AA|A|292
5T2C|1|AA|C|293
5T2C|1|AA|U|294
5T2C|1|AA|C|295

Current chains

Chain AA

18S rRNA

Nearby chains

Chain AK

40S ribosomal protein S6

Chain Ar

40S ribosomal protein S4, X isoform

Chain Aw

40S ribosomal protein S11