HL_5T2C_099

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GACUCAACAC

Length

10 nucleotides

Bulged bases

5T2C|1|AA|A|1253

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T2C_099 not in the Motif Atlas

Homologous match to HL_4V88_212

Geometric discrepancy: 0.3533

The information below is about HL_4V88_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

5T2C|1|AA|G|1245
5T2C|1|AA|A|1246
5T2C|1|AA|C|1247
5T2C|1|AA|U|1248
5T2C|1|AA|C|1249
5T2C|1|AA|A|1250
5T2C|1|AA|A|1251
5T2C|1|AA|C|1252
5T2C|1|AA|A|1253
5T2C|1|AA|C|1254

Current chains

Chain AA

18S rRNA

Nearby chains

Chain AB

40S ribosomal protein S20

Chain Ay

40S ribosomal protein S16