HL_5TCU_021

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

5TCU|1|A|G|1106

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TCU_021 not in the Motif Atlas

Homologous match to HL_4LFB_025

Geometric discrepancy: 0.2433

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

19

Unit IDs

5TCU|1|A|G|1101
5TCU|1|A|U|1102
5TCU|1|A|U|1103
5TCU|1|A|A|1104
5TCU|1|A|A|1105
5TCU|1|A|G|1106
5TCU|1|A|U|1107
5TCU|1|A|C|1108

Current chains

Chain A

16S RRNA

Nearby chains

Chain SG

30S ribosomal protein S7