HL_5TCU_033

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGAAUACAUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TCU_033 not in the Motif Atlas

Homologous match to HL_5J7L_138

Geometric discrepancy: 0.3885

The information below is about HL_5J7L_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68257.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5TCU|1|B|U|159
5TCU|1|B|G|160
5TCU|1|B|A|161
5TCU|1|B|A|162
5TCU|1|B|U|163
5TCU|1|B|A|164
5TCU|1|B|C|165
5TCU|1|B|A|166
5TCU|1|B|U|167
5TCU|1|B|A|168
5TCU|1|B|G|169

Current chains

Chain B

23S RRNA

Nearby chains

Chain LA

50S ribosomal protein L28