HL_5TCU_048

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUGAAUAGG

Length

9 nucleotides

Bulged bases

5TCU|1|B|U|690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TCU_048 not in the Motif Atlas

Geometric match to HL_4V9F_032

Geometric discrepancy: 0.2401

The information below is about HL_4V9F_032

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_87306.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

5TCU|1|B|C|685
5TCU|1|B|U|686
5TCU|1|B|G|687
5TCU|1|B|A|688
5TCU|1|B|A|689
5TCU|1|B|U|690
5TCU|1|B|A|691
5TCU|1|B|G|692
5TCU|1|B|G|693

Current chains

Chain B

23S RRNA

Nearby chains

Chain LH

50S ribosomal protein L35

Chain LO

50S ribosomal protein L15

Chain LS

50S ribosomal protein L33 1