HL_5TCU_096
3D structure
- PDB id
- 5TCU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Methicillin sensitive Staphylococcus aureus 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AUUGAAAAU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5TCU_096 not in the Motif Atlas
- Homologous match to HL_6UFM_002
- Geometric discrepancy: 0.2006
- The information below is about HL_6UFM_002
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.2
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 42
Unit IDs
5TCU|1|D|A|31
5TCU|1|D|U|32
5TCU|1|D|U|33
5TCU|1|D|G|34
5TCU|1|D|A|35
5TCU|1|D|A|36
5TCU|1|D|A|37
5TCU|1|D|A|38
5TCU|1|D|U|39
Current chains
- Chain D
- E-site tRNA CHAIN
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain E
- Transfer RNA; tRNA
- Chain S2
- 30S ribosomal protein S11
- Chain SG
- 30S ribosomal protein S7
- Chain X
- mRNA
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