HL_5TZS_003

3D structure

PDB id

5TZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Architecture of the yeast small subunit processome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.1 Å

Loop

Sequence

GAUGAUUC

Length

8 nucleotides

Bulged bases

5TZS|1|1|U|249

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TZS_003 not in the Motif Atlas

Geometric match to HL_4V88_191

Geometric discrepancy: 0.0005

The information below is about HL_4V88_191

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

5TZS|1|1|G|243
5TZS|1|1|A|244
5TZS|1|1|U|245
5TZS|1|1|G|246
5TZS|1|1|A|247
5TZS|1|1|U|248
5TZS|1|1|U|249
5TZS|1|1|C|250

Current chains

Chain 1

18S ribosomal RNA

Nearby chains

Chain 3

rpS6_ES6

Chain 5

rpS4_ES4

Chain D

rpS11_uS17