HL_5TZS_005

3D structure

PDB id

5TZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Architecture of the yeast small subunit processome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.1 Å

Loop

Sequence

GAUAGUGGC

Length

9 nucleotides

Bulged bases

5TZS|1|1|G|337

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TZS_005 not in the Motif Atlas

Homologous match to HL_4V88_193

Geometric discrepancy: 0.0168

The information below is about HL_4V88_193

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_82182.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

5TZS|1|1|G|330
5TZS|1|1|A|331
5TZS|1|1|U|332
5TZS|1|1|A|333
5TZS|1|1|G|334
5TZS|1|1|U|335
5TZS|1|1|G|336
5TZS|1|1|G|337
5TZS|1|1|C|338

Current chains

Chain 1

18S ribosomal RNA

Nearby chains

Chain 8

rpS8_eS8

Chain D

rpS11_uS17