HL_5UQ8_008
3D structure
- PDB id
- 5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CGGCGAG
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5UQ8_008 not in the Motif Atlas
- Homologous match to HL_7A0S_008
- Geometric discrepancy: 0.0962
- The information below is about HL_7A0S_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_37369.2
- Basepair signature
- cWW-tSH-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
5UQ8|1|A|C|246
5UQ8|1|A|G|247
5UQ8|1|A|G|248
5UQ8|1|A|C|249
5UQ8|1|A|G|250
5UQ8|1|A|A|251
5UQ8|1|A|G|252
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 1
- 50S ribosomal protein L28
- Chain 8
- 50S ribosomal protein L35
- Chain P
- 50S ribosomal protein L15
- Chain z
- Transfer RNA; tRNA
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