HL_5UQ8_024

3D structure

PDB id

5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAUGCAAAC

Length

10 nucleotides

Bulged bases

5UQ8|1|A|U|747, 5UQ8|1|A|A|751

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UQ8_024 not in the Motif Atlas

Homologous match to HL_7RQB_023

Geometric discrepancy: 0.1663

The information below is about HL_7RQB_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.6

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

6

Unit IDs

5UQ8|1|A|G|744
5UQ8|1|A|G|745
5UQ8|1|A|A|746
5UQ8|1|A|U|747
5UQ8|1|A|G|748
5UQ8|1|A|C|749
5UQ8|1|A|A|750
5UQ8|1|A|A|751
5UQ8|1|A|A|752
5UQ8|1|A|C|753

Current chains

Chain A

23S rRNA

Nearby chains

Chain 5

50S ribosomal protein L32

Chain 7

50S ribosomal protein L34

Chain E

50S ribosomal protein L3

Chain W

50S ribosomal protein L22