HL_5UQ8_046

3D structure

PDB id

5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUUACCAAAAA

Length

11 nucleotides

Bulged bases

5UQ8|1|A|A|1780, 5UQ8|1|A|C|1781, 5UQ8|1|A|C|1782, 5UQ8|1|A|A|1786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UQ8_046 not in the Motif Atlas

Homologous match to HL_7RQB_045

Geometric discrepancy: 0.1166

The information below is about HL_7RQB_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.5

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

5UQ8|1|A|U|1777
5UQ8|1|A|U|1778
5UQ8|1|A|U|1779
5UQ8|1|A|A|1780
5UQ8|1|A|C|1781
5UQ8|1|A|C|1782
5UQ8|1|A|A|1783
5UQ8|1|A|A|1784
5UQ8|1|A|A|1785
5UQ8|1|A|A|1786
5UQ8|1|A|A|1787

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L34

Chain D

50S ribosomal protein L2

Chain W

50S ribosomal protein L22