HL_5UQ8_067

3D structure

PDB id

5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

5UQ8|1|A|G|2751, 5UQ8|1|A|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UQ8_067 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.1291

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

5UQ8|1|A|C|2745
5UQ8|1|A|U|2746
5UQ8|1|A|G|2747
5UQ8|1|A|A|2748
5UQ8|1|A|A|2749
5UQ8|1|A|A|2750
5UQ8|1|A|G|2751
5UQ8|1|A|C|2752
5UQ8|1|A|A|2753
5UQ8|1|A|U|2754
5UQ8|1|A|C|2755
5UQ8|1|A|U|2756
5UQ8|1|A|A|2757
5UQ8|1|A|A|2758
5UQ8|1|A|G|2759

Current chains

Chain A

23S rRNA

Nearby chains

Chain 9

50S ribosomal protein L36

Chain H

50S ribosomal protein L6