HL_5UQ8_078

3D structure

PDB id

5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGUAAUGGC

Length

9 nucleotides

Bulged bases

5UQ8|1|a|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UQ8_078 not in the Motif Atlas

Homologous match to HL_4LFB_006

Geometric discrepancy: 0.1475

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

5UQ8|1|a|G|259
5UQ8|1|a|G|260
5UQ8|1|a|U|261
5UQ8|1|a|A|262
5UQ8|1|a|A|263
5UQ8|1|a|U|264
5UQ8|1|a|G|265
5UQ8|1|a|G|266
5UQ8|1|a|C|267

Current chains

Chain a

16S rRNA

Nearby chains

Chain q

30S ribosomal protein S17

Chain t

30S ribosomal protein S20