HL_5VYC_057

3D structure

PDB id

5VYC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.

Experimental method

X-RAY DIFFRACTION

Resolution

6 Å

Loop

Sequence

GACUCAACAC

Length

10 nucleotides

Bulged bases

5VYC|1|i2|A|1253

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5VYC_057 not in the Motif Atlas

Homologous match to HL_4V88_212

Geometric discrepancy: 0.2623

The information below is about HL_4V88_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

5VYC|1|i2|G|1245
5VYC|1|i2|A|1246
5VYC|1|i2|C|1247
5VYC|1|i2|U|1248
5VYC|1|i2|C|1249
5VYC|1|i2|A|1250
5VYC|1|i2|A|1251
5VYC|1|i2|C|1252
5VYC|1|i2|A|1253
5VYC|1|i2|C|1254

Current chains

Chain i2

Human 18S ribosomal RNA

Nearby chains

Chain Q2

40S ribosomal protein S16

Chain U2

40S ribosomal protein S20

Chain f2

Ribosomal protein S27a