HL_5VYC_059
3D structure
- PDB id
- 5VYC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 6 Å
Loop
- Sequence
- GUUAAUUC
- Length
- 8 nucleotides
- Bulged bases
- 5VYC|1|i2|U|1371
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5VYC_059 not in the Motif Atlas
- Homologous match to HL_4V88_215
- Geometric discrepancy: 0.2168
- The information below is about HL_4V88_215
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_77436.2
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 23
Unit IDs
5VYC|1|i2|G|1366
5VYC|1|i2|U|1367
5VYC|1|i2|U|1368
5VYC|1|i2|A|1369
5VYC|1|i2|A|1370
5VYC|1|i2|U|1371
5VYC|1|i2|U|1372
5VYC|1|i2|C|1373
Current chains
- Chain i2
- Human 18S ribosomal RNA
Nearby chains
- Chain D2
- 40S ribosomal protein S3
- Chain R2
- 40S ribosomal protein S17
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