HL_5VYC_191

3D structure

PDB id

5VYC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.

Experimental method

X-RAY DIFFRACTION

Resolution

6 Å

Loop

Sequence

GUUAAUUC

Length

8 nucleotides

Bulged bases

5VYC|1|i6|U|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5VYC_191 not in the Motif Atlas

Homologous match to HL_4V88_215

Geometric discrepancy: 0.2166

The information below is about HL_4V88_215

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

5VYC|1|i6|G|1366
5VYC|1|i6|U|1367
5VYC|1|i6|U|1368
5VYC|1|i6|A|1369
5VYC|1|i6|A|1370
5VYC|1|i6|U|1371
5VYC|1|i6|U|1372
5VYC|1|i6|C|1373

Current chains

Chain i6

Human 18S ribosomal RNA

Nearby chains

Chain D6

40S ribosomal protein S3

Chain R6

40S ribosomal protein S17