HL_5WYJ_015
3D structure
- PDB id
- 5WYJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S small subunit pre-ribosome (Dhr1-depleted, Enp1-TAP, state 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.7 Å
Loop
- Sequence
- GAUAGUGGC
- Length
- 9 nucleotides
- Bulged bases
- 5WYJ|1|SA|G|337
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5WYJ_015 not in the Motif Atlas
- Homologous match to HL_4V88_193
- Geometric discrepancy: 0.3078
- The information below is about HL_4V88_193
- Detailed Annotation
- GNRA related
- Broad Annotation
- GNRA related
- Motif group
- HL_82182.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 19
Unit IDs
5WYJ|1|SA|G|330
5WYJ|1|SA|A|331
5WYJ|1|SA|U|332
5WYJ|1|SA|A|333
5WYJ|1|SA|G|334
5WYJ|1|SA|U|335
5WYJ|1|SA|G|336
5WYJ|1|SA|G|337
5WYJ|1|SA|C|338
Current chains
- Chain SA
- 18S ribosomal RNA
Nearby chains
- Chain SJ
- 40S ribosomal protein S8-A
- Chain SM
- 40S ribosomal protein S11-A
Coloring options: