HL_5WYK_006

3D structure

PDB id

5WYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S small subunit pre-ribosome (Mtr4-depleted, Enp1-TAP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GCAUAUU

Length

7 nucleotides

Bulged bases

5WYK|1|5A|A|260

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5WYK_006 not in the Motif Atlas

Geometric match to HL_2Y9H_005

Geometric discrepancy: 0.399

The information below is about HL_2Y9H_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86870.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

5WYK|1|5A|G|250
5WYK|1|5A|C|251
5WYK|1|5A|A|252
5WYK|1|5A|U|253
5WYK|1|5A|A|260
5WYK|1|5A|U|261
5WYK|1|5A|U|262

Current chains

Chain 5A

5ETS RNA

Nearby chains

Chain U5

Ribosome biogenesis protein UTP30