HL_6AZ1_006

3D structure

PDB id

6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUUGACUC

Length

8 nucleotides

Bulged bases

6AZ1|1|1|U|297

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6AZ1_006 not in the Motif Atlas

Homologous match to HL_4V88_191

Geometric discrepancy: 0.3339

The information below is about HL_4V88_191

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6AZ1|1|1|G|291
6AZ1|1|1|U|292
6AZ1|1|1|U|293
6AZ1|1|1|G|294
6AZ1|1|1|A|295
6AZ1|1|1|C|296
6AZ1|1|1|U|297
6AZ1|1|1|C|298

Current chains

Chain 1

ribosomal RNA 18S

Nearby chains

Chain E

ribosomal protein S4e

Chain G

ribosomal protein S6e

Chain U

ribosomal protein S17