HL_6AZ1_008
3D structure
- PDB id
- 6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UGUAGUGGA
- Length
- 9 nucleotides
- Bulged bases
- 6AZ1|1|1|G|381
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6AZ1_008 not in the Motif Atlas
- Homologous match to HL_4V88_193
- Geometric discrepancy: 0.16
- The information below is about HL_4V88_193
- Detailed Annotation
- GNRA related
- Broad Annotation
- GNRA related
- Motif group
- HL_82182.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 19
Unit IDs
6AZ1|1|1|U|374
6AZ1|1|1|G|375
6AZ1|1|1|U|376
6AZ1|1|1|A|377
6AZ1|1|1|G|378
6AZ1|1|1|U|379
6AZ1|1|1|G|380
6AZ1|1|1|G|381
6AZ1|1|1|A|382
Current chains
- Chain 1
- ribosomal RNA 18S
Nearby chains
- Chain K
- ribosomal protein S8e
- Chain U
- ribosomal protein S17
Coloring options: