HL_6AZ1_036
3D structure
- PDB id
- 6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GCUCAUCA(A2M)AC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6AZ1_036 not in the Motif Atlas
- Geometric match to HL_5J7L_029
- Geometric discrepancy: 0.28
- The information below is about HL_5J7L_029
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06226.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6AZ1|1|1|G|2013
6AZ1|1|1|C|2014
6AZ1|1|1|U|2015
6AZ1|1|1|C|2016
6AZ1|1|1|A|2017
6AZ1|1|1|U|2018
6AZ1|1|1|C|2019
6AZ1|1|1|A|2020
6AZ1|1|1|A2M|2021
6AZ1|1|1|A|2022
6AZ1|1|1|C|2023
Current chains
- Chain 1
- ribosomal RNA 18S
Nearby chains
- Chain C
- ribosomal protein S3
- Chain L
- ribosomal protein S9
- Chain M
- ribosomal protein S10
- Chain S
- ribosomal protein S14
- Chain X
- ribosomal protein S19e
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