HL_6B4V_196

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

6B4V|1|FB|G|2751, 6B4V|1|FB|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6B4V_196 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.1209

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

6B4V|1|FB|C|2745
6B4V|1|FB|U|2746
6B4V|1|FB|G|2747
6B4V|1|FB|A|2748
6B4V|1|FB|A|2749
6B4V|1|FB|A|2750
6B4V|1|FB|G|2751
6B4V|1|FB|C|2752
6B4V|1|FB|A|2753
6B4V|1|FB|U|2754
6B4V|1|FB|C|2755
6B4V|1|FB|U|2756
6B4V|1|FB|A|2757
6B4V|1|FB|A|2758
6B4V|1|FB|G|2759

Current chains

Chain FB

23S ribosomal RNA

Nearby chains

Chain KC

50S ribosomal protein L36

Chain MB

50S ribosomal protein L6

Chain OB

50S ribosomal protein L13